unlock/analysis/andres/Code/setUnlockParams.m File Reference

Functions
Number of EEG leads and extra	channels (EMG, EOG, triggers) unlockInfo.main.endTrialFlag
flag used to signal end of	trial (when decoder makes a decision) unlockInfo.main.triggeredData
trial length in	seconds (fixation, delay, reward...time flashing lasts before decoding) unlockInfo.epoch.changedTrialLen
flag indicating epochs length has been changed due to problems in trials	size (diff.number of samples, some lag in decoderTrial trigger) unlockInfo.epoch.endTrialFlag
in seconds extra time after dcd trigger is included To assure data is from same	trial (when size of trial changes during recording) unlockInfo.epoch.endGap=0.1
if	~isempty (freqPos) kk
unlockInfo decoder	stimFreq (iFreq)
line width unlockInfo plot	colors (1,:)
	: (id chEnd)
unlockInfo.plot.typePlot,'spectAll'	harmoNum ()
if	~isempty (indxVal) indxPos
Variables
function	unlockInfo
total number of channels unlockInfo main	nChs = 8
logical True if each trial has a trigger so fromEnd or fromStart are not required for epoching Filter params unlockInfo main	freqBand = [0.5 40]
unlockInfo main	filterType = 'butter'
unlockInfo main	filterOrder = 2
Intended to	be
Intended to filtfilt doubles filter order unlockInfo main	doFilterData = false
Epoch info unlockInfo epoch	trialLen = '3 + iti?'
flag to signal end of sec trial epoch data unlockInfo epoch	doEpochs = false
logical True to separate epochos trials unlockInfo epoch	doTrimEpochs = true
cuts epochs to get data from appropriate epochs only Reducing length but assuring frequency of stim is correct unlockInfo epoch	fromEnd = true
extract epochs from the end to the start If false start from first sample unlockInfo epoch	startGap = 0.1
unlockInfo behav	stimLen = 3
unlockInfo behav	delayDur = ''
Decoder info unlockInfo decoder	targets = [12,13,14,15]
Possible targets unlockInfo decoder	nTgts = length(unlockInfo.decoder.targets)
total number of targets unlockInfo decoder	dcdCh = 'Oz'
unlockInfo decoder	dcdType = 'hsd'
decoder type Harmonic sum decision HSD Get stim frequencies based on file name Unlock should give this info if unlockInfo main triggeredData To find stimFreq when only one is presented per session unlockInfo decoder	stimFreq = getStimFreqFromName(unlockInfo)
cuts epochs to get data from appropriate epochs only Reducing length but assuring frequency of stim is correct else To find stimFreq for two frequencies alternating in a session	indxFreq = strfind(unlockInfo.main.parentFile,'collector')
Finding values of stim freqs	kk = 0
for	iFreq
end end end Plot Params unlockInfo plot	lineWidth = 5
color of line plot unlockInfo plot	chStart = 1
Channels plotted unlockInfo plot	freq1 = 8
lower bound frequency unlockInfo plot	freq2 = 19
higher bound frequency unlockInfo plot	windSz = 5
Size of plotted window unlockInfo plot	movWind = 0.5
Size of window moves unlockInfo plot	harmoNum = 1
harmonics to plot Zero for basic frequency for first harmonic unlockInfo plot	typePlot = 'spectAll'
for	iVals

---

Function Documentation

:

(

id

chEnd

)

[virtual]

Number of EEG leads and extra channels	(	EMG	,
		EOG	,
		triggers
	)

line width unlockInfo plot colors	(	1	,
		:
	)

unlockInfo.plot.typePlot,'spectAll' harmoNum

(

)

[virtual]

trial length in seconds	(	fixation	,
		delay	,
		reward...time flashing lasts before	decoding
	)

flag indicating epochs length has been changed due to problems in trials size	(	diff.number of	samples,
		some lag in decoderTrial	trigger
	)

unlockInfo decoder stimFreq

(

iFreq

)

in seconds extra time after dcd trigger is included To assure data is from same trial

(

when size of trial changes during

recording

)

[pure virtual]

flag used to signal end of trial

(

when decoder makes a

decision

)

if ~isempty

(

freqPos

)

if ~isempty

(

indxVal

)

---

Variable Documentation

Intended to be

color of line plot unlockInfo plot chStart = 1

total number of targets unlockInfo decoder dcdCh = 'Oz'

unlockInfo decoder dcdType = 'hsd'

unlockInfo behav delayDur = ''

SpecInfo doEpochs = false

Intended to filtfilt doubles filter order unlockInfo main doFilterData = false

unlockInfo epoch doTrimEpochs = true

unlockInfo main filterOrder = 2

unlockInfo main filterType = 'butter'

Channels plotted unlockInfo plot freq1 = 8

lower bound frequency unlockInfo plot freq2 = 19

logical True if each trial has a trigger so fromEnd or fromStart are not required for epoching Filter params unlockInfo main freqBand = [0.5 40]

cuts epochs to get data from appropriate epochs only Reducing length but assuring frequency of stim is correct unlockInfo epoch fromEnd = true

Size of window moves unlockInfo plot harmoNum = 1

for iFreq

Initial value:

 1:unlockInfo.decoder.nTgts
        freqPos = strfind(unlockInfo.main.parentFile(indxFreq+8:end),num2str(unlockInfo.decoder.targets(iFreq)))

cuts epochs to get data from appropriate epochs only Reducing length but assuring frequency of stim is correct else To find stimFreq for two frequencies alternating in a session indxFreq = strfind(unlockInfo.main.parentFile,'collector')

for iVals

Initial value:

 1:length(possibleVals)
    indxVal = strfind(unlockInfo.main.parentFile,possibleVals{iVals})

Finding values of stim freqs kk = 0

end end end Plot Params unlockInfo plot lineWidth = 5

Size of plotted window unlockInfo plot movWind = 0.5

total number of channels unlockInfo main nChs = 8

Possible targets unlockInfo decoder nTgts = length(unlockInfo.decoder.targets)

extract epochs from the end to the start If false start from first sample unlockInfo epoch startGap = 0.1

end end stimFreq = getStimFreqFromName(unlockInfo)

unlockInfo behav stimLen = 3

Decoder info unlockInfo decoder targets = [12,13,14,15]

Epoch info unlockInfo epoch trialLen = '3 + iti?'

harmonics to plot Zero for basic frequency for first harmonic unlockInfo plot typePlot = 'spectAll'

function unlockInfo

Initial value:

 setUnlockParams(unlockInfo)
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% Author:       Andres 
% Created:      v1. 02 Jan 2014 
% Las modified: v1. 02 Jan 2014

%% Main Params
unlockInfo.main.nCols           = 12

higher bound frequency unlockInfo plot windSz = 5